Method Profile

Drug Uptake Quantification in 3D Blood–Brain Barrier Organoids

A human-cell BBB organoid assay estimates drug concentrations within single organoids from UPLC-MS/MS measurements of their lysates and compares uptake ratios with published in vivo brain-to-plasma data.

Brain & Neural ModelsOrganoids
Deming regression of ln-transformed BBB organoid drug-uptake ratios against ln-transformed published mammalian brain-to-plasma ratios.
Log-transformed organoid uptake ratios versus published mammalian brain-to-plasma ratios. (Bay et al., Fig. 6D, CC BY 4.0)

Research Applications

Explore whether quantitative uptake in a human-cell barrier model can help rank drugs for brain exposure in early development.

Model & Design

Three-dimensional assemblies of hCMEC/D3 human brain microvascular endothelial cells, primary pericytes and primary astrocytes; main analysis on day 3 after assembly.

Experimental Format

Expose organoids to drugs at defined concentrations and times; quantify drug in individual organoid lysates by UPLC-MS/MS, then estimate the internal concentration using an approximate spherical organoid volume (radius 100 μm). The uptake ratio divides this estimate by the corresponding incubation concentration.

Model Components

  • Component

    Human-cell BBB organoids

    Description

    hCMEC/D3 endothelial cell line with primary pericytes and astrocytes.

  • Component

    UPLC-MS/MS drug assays

    Description

    Drug-specific calibration and quality-control samples in organoid matrix.

Measurements & Endpoints

  • Estimated drug concentration inside individual organoids
  • Organoid-to-medium uptake ratio at apparent steady state
  • Association with published brain-to-plasma ratios by Deming regression
  • ATP viability and LDH cytotoxicity under the tested conditions

Analysis

Thirteen drugs were measured. Conditions entered downstream analysis when at least seven individual organoids from two preparations were quantifiable; uptake experiments were repeated independently three times. For correlation, mean uptake ratios based on at least 10 organoids were compared with published in vivo ratios after log transformation. Octreotide at background level was excluded from the logarithmic regression.

Published Evidence

  • Study Design

    Compare measurable drug uptake ratios with heterogeneous published mammalian, primate and human brain-to-plasma data.

    Study Sample

    Thirteen drugs tested; 12 had measurable concentrations usable for the main correlation. Available drug subsets differ in primate and human analyses.

    Comparison

    Literature brain-to-plasma or related unbound brain/CSF-to-plasma ratios, not a prospective patient cohort.

    Finding

    Combined mammalian Deming regression pseudo-R² 0.64; primate and human subsets 0.81 and 0.82. Four in silico comparators showed no correlation with this reference set in this study.

    Interpretation & Limits
    • Different species, matrices, disease states and sampling times in reference literature.
    • Subgroup regressions use different drug subsets and are not directly comparable.
    • Between-organoid variation and absent blood flow limit physiologic extrapolation.
    • Unreviewed preprint; no regulatory qualification claimed.

Sources

  1. Drug quantification in single 3D organoids reveals correlation to reported in vivo brain uptake and demonstrates translational relevance for prediction of blood-brain barrier permeability. Research Square. 2026-10-21. DOI: 10.21203/rs.3.rs-11433171/v1. ↗